Computing the Rearrangement Distance of Natural Genomes
Published in Proceedings of RECOMB 2020, 2020
Posts by Collection
portfolio
publications
Computing the Rearrangement Distance of Natural Genomes
Published in Journal of Computational Biology, 2021
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets
Published in Molecular Biology and Evolution, 2023
The Floor Is Lava - Halving Genomes with Viaducts, Piers and Pontoons
Published in Proceedings of RECOMB-CG 2023, 2023
Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem
Published in Proceedings of WABI 2023, 2023
Recombinations, chains and caps: resolving problems with the DCJ-indel model
Published in Algorithms for Molecular Biology, 2024
The Floor Is Lava: Halving Natural Genomes with Viaducts, Piers, and Pontoons
Published in Journal of Computational Biology, 2024
Reconstructing Rearrangement Phylogenies of Natural Genomes
Published in Proceedings of WABI 2024, 2024
Applying rearrangement distances to enable plasmid epidemiology with pling
Published in Microbial Genomics, 2024
talks
RECOMB Proceedings Talk: Computing the rearrangement distance of natural genomes
Published:
I don’t have the slides for this one anymore. However, I still have the prerecorded version of the talk.
RECOMB-CG Proceedings Talk: The Floor is Lava - Halving Genomes with Viaducts, Piers and Pontoons
Published:
teaching
Code Reading Club
journal club, Bielefeld University, 2023
A journal club, but for code!
Algorithms in Comparative Genomics (Lecture/Exercises)
lecture, Bielefeld University, 2024
A course for master students, teaching techniques in Comparative Genomics, such as rearrangement models and gene cluster analysis.
Classic (and Cutting-Edge) Algorithms in Bioinformatics
literature seminar, Bielefeld University, 2024
A course focused on examining influential papers on algorithms in Bioinformatics. It started out as a seminar on classic algorithms in comparative genomics in the summer semester of 2022 and then gradually widened the scope to include nice algorithms and data structures, such as Suffix Arrays, Neighbor Joining, pBWT etc.
Bioinformatics Applications in Genome Research
practical course, Bielefeld University, 2025
A practical course for master students focusing on more advanced techniques and workflow construction in genome research.
Sequence Analysis (Exercises/Practical Course)
exercises, Bielefeld University, 2025
A mandatory course for bachelor students in bioinformatics at Bielefeld university. The exercises focus on learning the principles of sequence analysis algorithms (such as Smith-Waterman) and data structures (such as Suffix Trees). The practical course focuses on applying tools for common bioinformatics problems, such as assembly or mapping.