CV

Coming soon, meanwhile:

Publications

Applying rearrangement distances to enable plasmid epidemiology with pling

Reconstructing Rearrangement Phylogenies of Natural Genomes

The Floor Is Lava: Halving Natural Genomes with Viaducts, Piers, and Pontoons

Recombinations, chains and caps: resolving problems with the DCJ-indel model

Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem

The Floor Is Lava - Halving Genomes with Viaducts, Piers and Pontoons

HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets

Computing the Rearrangement Distance of Natural Genomes

Computing the Rearrangement Distance of Natural Genomes

Talks

Talk at EBI: Quantifying Rearrangements in Pangenomes

May 15, 2025

Talk at -, Hinxton, UK

DSB Talk: CARP - Quantifying Structural Complexity of Pangenomes

March 05, 2025

Talk at DSB 2025, Pisa, Italy

WABI Proceedings Talk: Bridging Disparate Views on the DCJ-indel model for a Capping-free Solution to the Natural Distance Problem

September 16, 2023

Conference proceedings talk at WABI 2023, Houston, TX

RECOMB-CG Proceedings Talk: The Floor is Lava - Halving Genomes with Viaducts, Piers and Pontoons

April 14, 2023

Conference proceedings talk at RECOMB-CG 2023, Istanbul, Turkey

ILW Master Thesis Award Talk: Halving Natural Genomes

September 16, 2022

Award Talk at International Symposium on Integrative Bioinformatics 2022, Konstanz, Germany

RECOMB Proceedings Talk: Computing the rearrangement distance of natural genomes

June 23, 2020

Conference proceedings talk at RECOMB 2020, Online

Teaching

Sequence Analysis (Exercises/Practical Course)

Bioinformatics Applications in Genome Research

Classic (and Cutting-Edge) Algorithms in Bioinformatics

Algorithms in Comparative Genomics (Lecture/Exercises)

Code Reading Club