Applying rearrangement distances to enable plasmid epidemiology with pling
Published in Microbial Genomics, 2024
Publications
You can also find a (probably more exhaustive) list of my articles on my Google Scholar profile.
Journal Articles
The Floor Is Lava: Halving Natural Genomes with Viaducts, Piers, and Pontoons
Published in Journal of Computational Biology, 2024
Recombinations, chains and caps: resolving problems with the DCJ-indel model
Published in Algorithms for Molecular Biology, 2024
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets
Published in Molecular Biology and Evolution, 2023
Computing the Rearrangement Distance of Natural Genomes
Published in Journal of Computational Biology, 2021
Conference Papers
Reconstructing Rearrangement Phylogenies of Natural Genomes
Published in Proceedings of WABI 2024, 2024
Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem
Published in Proceedings of WABI 2023, 2023
The Floor Is Lava - Halving Genomes with Viaducts, Piers and Pontoons
Published in Proceedings of RECOMB-CG 2023, 2023
Computing the Rearrangement Distance of Natural Genomes
Published in Proceedings of RECOMB 2020, 2020